• Computational prediction of Caenorhabditis elegans and Caenorhabditis briggsae miRNAs by modified miRsearch. (2013). Avirup Dutta, Raghunath Chatterjee and Keya Chaudhuri. Frontiers in Bioscience (Accepted).

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• In-Silico structural and functional characterization of a V. cholerae O395 hypothetical protein containing a PDZ1 and an uncommon protease domain. (2013). Dutta A, Katarkar A and Chaudhuri K. PLoS One. 8(2): e56725. doi:10.1371/journal.pone.0056725.



• In-silico comparative study of the Genomic Islands of Vibrio cholerae MJ1236 with those of Classical and El Tor N16961 strains of Vibrio cholerae. (2011). Dutta A, Kundu J, Chatterjee R and Chaudhuri K. FEMS Microbiology Letters 321: 75-81.

• In silico identification of possible novel virulence factors in Vibrio cholerae O395. (2011). Dutta A, Kundu JK and Chaudhuri K. Biotechnology Bioinformatics Bioengineering 1(3):289-297.

• Analysis of tRNA composition and folding in psychrophilic, mesophilic and thermophilic genomes: indications for thermal adaptation. Dutta A and Chaudhuri K. (2010). FEMS Microbiology Letters 305: 100-108.

• In-silico identification of putative p53 transcription factor DNA-binding sites and detection of hnRNP genes regulated by p53. (2010). Dutta A, Chatterjee R, Roychoudhury P, Roy P and Chaudhuri K. The Icfai University Journal of Biotechnology 4(2): 7-19.

• On detection and assessment of statistical significance of Genomic Islands. (2008) Chatterjee R, Chaudhuri K and Chaudhuri P. BMC Genomics 9:150.

• Molecular evolution of archaeal CRISPR and Cas genes. Chatterjee R, Dutta A, Chaudhuri K. (2007). Online Journal of Bioinformatics 8 (2): 189-204.

• Unsupervised statistical identification of genomic islands using oligonucleotide distributions with application to Vibrio genomes. (2006). Nag S, Chatterjee R, Chaudhuri K and Chaudhuri P. Sadhana 31: 105-115.

• An approach for the identification of microRNA with an application to Anopheles gambiae. (2006) Chatterjee R and Chaudhuri K. Acta Biochimica Polonica 53: 303-309.

• Analysis of haemophilia B database and strategies for identification of common point mutations in the factor IX gene. (2003). Mukherjee S, Mukhopadhyay A, Chaudhuri K and Ray K. Haemophilia 9:187-192.

• Evolutionary changes in the dopamine beta hydroxylase and dopamine transporter, two important proteins controlling action of dopamine. (2003). Bhaduri, N, Raychaudhuri, S, Chaudhuri, K and Mukhopadhyay, K. International Archives of Biosciences 1122-1128.

• Did myocilin evolve from two different primordial proteins? (2002). Mukhopadhyay A, gupta A, Mukherjee S, Chaudhuri K and Ray K. Molecular Vision 8:271-297.