​Genomic variation


• Effect of smoking on semen quality, FSH, testosterone level and CAG repeat length in Androgen receptor gene of infertile men in an Indian city. (2012). Mitra A, Chakraborty B, Mukhopadhay D, Pal M, Mukherjee S, Banerjee S, Chaudhuri K. System Biology in Reproductive Medicine May 14. [Epub ahead of print]. PMID: 22578234. October 2012, Vol. 58, No. 5 , Pages 255-262.

• Generating STR Profile from "Touch DNA”. (2011). Aditya S, Bhattacharya CN and Chaudhuri K. Journal of Forensic Legal Med 18: 295-298. doi: 10.1016/j.jflm.2011.05.007.PMID:21907930.

• Expression of metallothionin-1 (MT-1) mRNA in the rat testis and liver after cadmium injection. Mukhopadhyay D, Mitra A, Nandi P, Vargheses AC, Murmu N, Chowdhury R, Chaudhuri K and Bhattacharyya. (2009) System Biology in Reproductive Medicine 55(5-6):188-192.

• Genetic landscape of the people of India: a canvas for disease gene exploration. (2008). The Indian genome variation consortium. Journal of Genetics  87:3-20.

• Association of dopamine D4 receptor (DRD4) polymorphisms with attention deficit hyperactivity disorder in Indian population. (2006) Bhaduri N, Das M, Sinha S, Chattopadhyay A, Gangopadhyay PK, Chaudhuri K, Singh M, and Mukhopadhyay K. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 141: 61-66.

• MAOA promoter polymorphism and attention deficit hyperactivity disorder (ADHD) in Indian children. (2006). Das M, Das-Bhowmick A, Sinha S, Chattopadhyay A,  Chaudhuri K, Singh M and Mukhopadhyay K. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 141:637-642.

• The Indian genome variation database (IGVdb): a project overview. (2005) The Indian genome variation consortium. Human Genetics 118: 1-11.

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​Drug: Mechanism of action


• Effect of quercetin on Vibrio cholerae induced Nuclear Factor-κB activation and interleukin-8 expression in intestinal epithelial cells. (2012). Das T, Mukherjee S and Chaudhuri K. Microbes and Infection; 14(9):690-695. doi: 10.1016/j.micinf.2012.02.007; Feb 28. [Epub ahead of print]. PMID: 22421109.

• Degradation of bacterial DNA by a natural antimicrobial agent with the help of biomimetic membrane system. (2012) Bhandary S, Chaki S, Mukherjee S, Das S, Mukherjee S, Chaudhuri K and Dastidar SG. Indian Journal of Experimental Biology 50: 491-496.

• Novel glycoconjugates of diospyrin, a quinonoid plant product: synthesis and evaluation of cytotoxicity against human malignant melanoma (A375) and laryngeal carcinoma (Hep2). Sarma MD, Ghosh R, Patra A, Chowdhury R, Chaudhuri K, Hazra B. (2007) Organic and Biomolecular Chemistry 5:3115-3125.

• Mode of antibacterial action of diclofenac by demonstration of its binding to bacterial DNA by radiolabelling. (2000). Dastidar SG, Ganguly K, Chaudhuri K and Chakrabarty AN. International Journal of Antimicrobial Agents 14:249-251.

• Hepatotoxicity of diazepam: structural and trace metal studies in rat. (1997). Chatterjee SK, Chatterjee J, Chaudhuri K, Basu SK and Maiti CR. Biological Trace Element Research 57:235-250.

• Sanguinarine: A DNA binding ligand. (1986). Maiti M, Nandi R and Chaudhuri K. Proc. (Spl. Issue) of the Fifth ISHS Symp.Med. Arom.Spice Plan, 103-116.

• Effects of ionic strength and pH on the binding of sanguinarine to deoxyribonucleic acid. (1985). Nandi R, Chaudhuri K and Maiti M. Photochemistry and Photobiology 42:497-504.

• Interaction of sanguinarine with natural and synthetic deoxyribonucleic acids. (1984). Maiti M, Nandi R and Chaudhuri K. Indian Journal of Biochemistry and Biophysics 21:158-165.

• Effect of berberine chloride binding on the structure of choleraphage phi 2 DNA.(1983).Chaudhuri K, Nandi R and Maiti M. Indian Journal of Biochemistry and Biophysics 20:188-192.

• Sensitivity of vibrios to sanguinarine. (1983). Nandi R, Maiti M, Chaudhuri K, Mahato SB and Bairagi AK. Experientia 39:524-525.

• The effect of pH on the absorption of fluorescence spectra of sanguinarine. (1983). Maiti M, Nandi R and Chaudhuri K. Photochemistry and Photobiology 38:245-249.

• Sanguinarine: a monofunctional intercalating alkaloid. (1982).Maiti M, Nandi R and Chaudhuri K. FEBS Letters 142:280-284.

• Interaction of berberine chloride with naturally occurring deoxyribonucleic acids. (1981). Maiti M and Chaudhuri K. Indian Journal of Biochemistry and Biophysics 18:245-250.

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Radiation Biology

• Statistical modeling of ultrastructural features of murine dermal collagen under chronic low-dose whole body x-irradiation. (2007). Chatterjee J, Mukherjee A, Mukherjee K, Dutta PK and Chaudhuri K. FEBS Letters 581:5034-5042.

• Increased expression of genes in a radioresistant cell strain: modulation of hnRNP E2, Hsp90 and SSBP2 genes in Gamma-irradiated Chinese hamster V79 cells. (2007). Roychoudhury P, Pandit B, Pathak R, Chaudhuri K and Bhattacharyya NP. International Journal of Low Radiation 4: 313-331.

• Trend analysis of tissue zinc content for medical radiation workers using fuzzy logic. (2006) Chakraborty D, Chakraborty C, Chatterjee J, Basu SK, Das AK, Palchowdhury S, Chakraborty S and Chaudhuri K. International Journal of Pure and Applied Mathematics 28:463- 476.

• Activation of mitochondrial promoter P(H)-binding protein in a radio-resistant Chinese hamster cell strain associated with Bcl-2. (2006). Roychoudhury P, Ghosh U, Bhattacharyya NP and Chaudhuri K. Biochemical and Biophysical Research Communications 350:272-276.

• Identification of two differentially expressed mitochondrial genes in a methotrexate-resistant Chinese hamster cell strain derived from V79 cells using RNA fingerprinting by arbitrary primed polymerase chain reaction. (2003). Chaudhuri K, Banerjee R, Pandit B, Mukherjee A, Das S, Sengupta S, Roychoudhury S and Bhattacharya NP. Radiation Research 160:77-85.

• Ultrastructural and trace metal studies on radiographers’ hair and nails. (1999). Majumdar S, Chatterjee J and Chaudhuri K. Biological Trace Element Research 67:127-139.

• A trace metal (Zinc and Iron) study on low dose x-radiation response in rat skin. (1997). Chatterjee J, Chaudhuri K, Das AK, Basu S, De K and Majumdar S. Health Physics 73:362-368.

• Depletion of zinc to iron ratio in blood of medical radiographers: a possible indication of occupational risk. (1997). Chatterjee, J, Chaudhuri, K, Majumdar, S, Basu, S and Das AK. Bulletin of RG Kar Medical College 2:12-17.



Publications as a Member of Indian Genome Variation Consortium



• Indian Genome Variation Consortium. The Indian Genome Variation database (IGVdb): a project overview. Hum Genet. 2005 Oct; 118(1):1-11. Epub 2005 Aug 25.Review. PMID: 16133172.



• Mahajan A, Chavali S, Ghosh S, Kabra M, Chowdhury MR; Indian Genome Variation Consortium, Bharadwaj D. Allelic heterogeneity of molecular events in human coagulation factor IX in Asian Indians. Mutation in brief #965. Online. Hum Mutat. 2007 May;28(5):526. PMID: 17397055.



• Gupta A, Maulik M, Nasipuri P, Chattopadhyay I, Das SK, Gangopadhyay PK; Indian Genome Variation Consortium, Ray K. Molecular diagnosis of Wilson disease using prevalent mutations and informative single-nucleotide polymorphism markers. Clin Chem. 2007 Sep;53(9):1601-8. PMID: 17634212.



• Biswas A, Maulik M, Das SK; Indian Genome Variation Consortium, Ray K, Ray J. Parkin polymorphisms: risk for Parkinson's disease in Indian population. Clin Genet. 2007 Nov;72(5):484-6. PMID: 17935510.



• Saha A, Mukherjee S, Maulik M, Chandak GR; Indian Genome Variation Consortium, Ray K. Evaluation of genetic markers linked to hemophilia A locus: an Indian experience. Haematologica. 2007 Dec; 92(12):1725-6. PMID: 18056007.



• Sinha S, Mishra SK, Sharma S, Patibandla PK, Mallick PK, Sharma SK, Mohanty S, Pati SS, Mishra SK, Ramteke BK, Bhatt R, Joshi H, Dash AP, Ahuja RC, Awasthi S;Indian Genome Variation Consortium, Venkatesh V, Habib S. Polymorphisms of TNF-enhancer and gene for FcgammaRIIa correlate with the severity of falciparum malaria in the ethnically diverse Indian population. Malar J. 2008 Jan 14; 7:13. PMID: 18194515.



• Prasher B, Negi S, Aggarwal S, Mandal AK, Sethi TP, Deshmukh SR, Purohit SG, Sengupta S, Khanna S, Mohammad F, Garg G, Brahmachari SK; Indian Genome Variation Consortium, Mukerji M. Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda. J Transl Med. 2008 Sep 9;6:48. PMID: 18782426.



• Sinha S, Qidwai T, Kanchan K, Anand P, Jha GN, Pati SS, Mohanty S, Mishra SK, Tyagi PK, Sharma SK; Indian Genome Variation Consortium, Venkatesh V, Habib S. Variations in host genes encoding adhesion molecules and susceptibility to falciparum malaria in India. Malar J. 2008 Dec 4; 7:250. PMID: 19055786.



• Bhattacharjee A, Banerjee D, Mookherjee S, Acharya M, Banerjee A, Ray A, Sen A, Indian Genome Variation Consortium, Ray K. Leu432Val Polymorphism in CYP1B1 as a Susceptible Factor towards Predisposition to Primary Open Angle Glaucoma, Molecular Vision, 2008 14: 841-850. PMID: 18483560.



• Bahl S, Ahmed I; Indian Genome Variation Consortium, Mukerji M. Utilizing linkage disequilibrium information from Indian Genome Variation Database for mapping mutations: SCA12 case study. J Genet. 2009 Apr;88(1):55-60. PMID: 19417544.



• Sinha S, Arya V, Agarwal S; Indian Genome Variation Consortium, Habib S. Genetic differentiation of populations residing in areas of high malaria endemicity in India. J Genet. 2009 Apr;88(1):77-80. PubMed PMID: 19417547. PMID: 19417547.



• HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, LeeS, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM,Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium. Mapping human genetic diversity in Asia. Science. 2009 Dec 11;326(5959):1541-5. PMID: 20007900.



• Kumar J, Garg G, Kumar A, Sundaramoorthy E, Sanapala KR, Ghosh S, Karthikeyan G, Ramakrishnan L; Indian Genome Variation Consortium, Sengupta S. Single nucleotide polymorphisms in homocysteine metabolism pathway genes: association of CHDH A119C and MTHFR C677T with hyperhomocysteinemia. Circ Cardiovasc Genet. 2009 Dec;2(6):599-606. Epub 2009 Sep 5. PMID: 20031640.



• Sengupta M, Chakraborty Amrita, Indian Genome Variation Consortium, Ray K, Analysis of single nucleotide polymorphisms of PRNP gene in twenty four ethnic groups of India, Journal of Genetics, 2010. 89(2):247-51, PMID: 20861579.



• Biswas A, Sadhukhan T, Majumder S, Misra AK, Das SK, Indian Genome Variation Consortium, Ray K, Ray J. Evaluation of PINK1 variants in Indian Parkinson’s disease patients, Parkinsonism & Related Disorders, 16:167-71, Mar 2010. PMID: 19889566.



• EGLN1 involvement in high-altitude adaptation revealed through genetic analysis of extreme constitution types defined in Ayurveda. Shilpi Aggarwal, Sapna Negi, Pankaj Jha, Prashant K. Singh, Tsering Stobdan, M. A. Qadar Pasha, Saurabh Ghosh, Anurag Agrawal, Indian Genome Variation Consortium, Bhavana Prasher, and Mitali Mukerji. PNAS November 2, 2010 vol. 107 no. 44 18961-18966. PMID: 20956315.



• IGVBrowser- a genomic variation resource from diverse Indian populations. Narang A, Roy RD, Chaurasia A, Mukhopadhyay A, Mukerji M, Indian Genome Variation Consortium, and Dash D. Database (Oxford). Sep 15; 2010:baq022. PMID: 20843867.



Publications in Conference Proceedings



• Arsenic toxicity amelioration: a review. (2009) Chowdhury R, Das B and Chaudhuri K. In Perspectives in Cytology and Genetics 14: 175-184.Proceedings of the XIVth All India Congress of Cytology & Genetics, held in Indian Institute of Chemical Biology, Kolkata, Dec 1-4, 2009.



• Quantitative analysis of histopathological features of precancerous lesion and condition using image processing technique. (2006). Jadav AS, Banerjee S, Dutta PK, Paul RR, Pal M, Banerjee P, Chaudhuri K and Chatterjee J. Proc. 19th IEEE International Symp. On “Computer-based medical systems”CBMS-2006. IEEE Los Alamitos, CA, USA.

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• Sanguinarine: A DNA binding ligand. (1986). Maiti M, Nandi R and Chaudhuri K. Proc. (Spl. Issue) of the Fifth ISHS Symp.Med. Arom.Spice Plan, 103-116.